GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c4_7240 Pp3c4_7240	Chr04	5030639	5034112	Phytozome	v3.3	Physcomitrella_patens	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c4_7240V3.2 Pp3c4_7240V3.2 PAC:32921692	High	No	3015		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -28.182 AMFE: -0.690 GC content %: 40.862
Ppatens_Pp3c4_7240V3.3 Pp3c4_7240V3.3 PAC:32921690	High	No	2771		Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -28.058 AMFE: -0.689 GC content %: 40.707
Ppatens_Pp3c4_7240V3.5 Pp3c4_7240V3.5 PAC:32921691	High	No	1132		Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -29.072 AMFE: -0.665 GC content %: 43.728

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).