GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c4_970 Pp3c4_970	Chr04	544290	545420	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c4_970V3.1 Pp3c4_970V3.1 PAC:32920297	High	No	279		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -18.387 AMFE: -0.675 GC content %: 27.240
Ppatens_Pp3c4_970V3.2 Pp3c4_970V3.2 PAC:32920296	High	No	288		Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -17.535 AMFE: -0.647 GC content %: 27.083

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).