GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_1680 Pp3c5_1680	Chr05	1073529	1073919	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_1680V3.1 Pp3c5_1680V3.1 PAC:32954538	High	No	207		Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -24.783 AMFE: -0.546 GC content %: 45.411
Ppatens_Pp3c5_1680V3.2 Pp3c5_1680V3.2 PAC:32954539	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -23.734 AMFE: -0.540 GC content %: 43.990

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).