GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_1720 Pp3c5_1720	Chr05	1092077	1092493	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_1720V3.1 Pp3c5_1720V3.1 PAC:32954134	High	No	417		Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -38.297 AMFE: -0.665 GC content %: 57.554
Ppatens_Pp3c5_1720V3.2 Pp3c5_1720V3.2 PAC:32954135	High	No	234		Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -38.162 AMFE: -0.642 GC content %: 59.402

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).