GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_1820 Pp3c5_1820	Chr05	1121883	1123604	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_1820V3.1 Pp3c5_1820V3.1 PAC:32953732	High	No	1598		Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -29.950 AMFE: -0.673 GC content %: 44.493
Ppatens_Pp3c5_1820V3.2 Pp3c5_1820V3.2 PAC:32953733	High	No	620		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -29.581 AMFE: -0.622 GC content %: 47.581

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).