GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_19580 Pp3c5_19580	Chr05	13773480	13774877	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_19580V3.1 Pp3c5_19580V3.1 PAC:32952784	High	No	234		Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -26.368 AMFE: -0.593 GC content %: 44.444
Ppatens_Pp3c5_19580V3.2 Pp3c5_19580V3.2 PAC:32952785	High	No	681		Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -26.652 AMFE: -0.670 GC content %: 39.794

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).