GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_20670 Pp3c5_20670	Chr05	14481614	14482923	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_20670V3.1 Pp3c5_20670V3.1 PAC:32954707	High	No	967		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.586 AMFE: -0.670 GC content %: 44.157
Ppatens_Pp3c5_20670V3.2 Pp3c5_20670V3.2 PAC:32954708	High	No	565		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -27.858 AMFE: -0.622 GC content %: 44.779

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).