GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_2304 Pp3c5_2304	Chr05	1464222	1466694	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_2304V3.1 Pp3c5_2304V3.1 PAC:32953004	High	No	988		Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -21.862 AMFE: -0.669 GC content %: 32.692
Ppatens_Pp3c5_2304V3.2 Pp3c5_2304V3.2 PAC:32953005	High	No	1137		Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -22.982 AMFE: -0.682 GC content %: 33.685

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).