GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_26250 Pp3c5_26250	Chr05	18568417	18571620	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_26250V3.1 Pp3c5_26250V3.1 PAC:32954732	High	No	1687		Get ORF Coding potential... Type: noncoding Potential: -1.352 Folding energies... MFEI: -24.557 AMFE: -0.752 GC content %: 32.662
Ppatens_Pp3c5_26250V3.2 Pp3c5_26250V3.2 PAC:32954733	High	No	883		Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -26.840 AMFE: -0.683 GC content %: 39.298

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).