GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_4000 Pp3c5_4000	Chr05	2719711	2720853	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_4000V3.1 Pp3c5_4000V3.1 PAC:32955951	High	No	1075		Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -30.112 AMFE: -0.670 GC content %: 44.930
Ppatens_Pp3c5_4000V3.2 Pp3c5_4000V3.2 PAC:32955952	High	No	477		Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -31.530 AMFE: -0.657 GC content %: 48.008

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).