GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c5_4400 Pp3c5_4400	Chr05	2932142	2933262	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c5_4400V3.1 Pp3c5_4400V3.1 PAC:32953260	High	No	434		Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -28.111 AMFE: -0.604 GC content %: 46.544
Ppatens_Pp3c5_4400V3.2 Pp3c5_4400V3.2 PAC:32953259	High	No	543		Get ORF Coding potential... Type: noncoding Potential: -0.559 Folding energies... MFEI: -25.064 AMFE: -0.530 GC content %: 47.330

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).