GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c6_17240 Pp3c6_17240	Chr06	11140788	11141883	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c6_17240V3.1 Pp3c6_17240V3.1 PAC:32975947	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -23.557 AMFE: -0.610 GC content %: 38.591
Ppatens_Pp3c6_17240V3.2 Pp3c6_17240V3.2 PAC:32975948	High	No	782		Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -23.977 AMFE: -0.553 GC content %: 43.350

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).