Gene
Ppatens Pp3c6 23720
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c6_23720 Pp3c6_23720 |
Chr06 | 15471087 | 15473463 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c6_23720V3.1 Pp3c6_23720V3.1 PAC:32976377 |
High | No | 951 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -28.780 AMFE: -0.629 GC content %: 45.741 | |
| Ppatens_Pp3c6_23720V3.10 Pp3c6_23720V3.10 PAC:32976386 |
High | No | 1524 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -29.783 AMFE: -0.653 GC content %: 45.604 | |
| Ppatens_Pp3c6_23720V3.11 Pp3c6_23720V3.11 PAC:32976387 |
High | No | 1869 | Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -30.369 AMFE: -0.679 GC content %: 44.730 | |
| Ppatens_Pp3c6_23720V3.12 Pp3c6_23720V3.12 PAC:32976388 |
High | No | 1095 | Get ORF Coding potential... Type: noncoding Potential: -0.675 Folding energies... MFEI: -27.406 AMFE: -0.636 GC content %: 43.105 | |
| Ppatens_Pp3c6_23720V3.13 Pp3c6_23720V3.13 PAC:32976389 |
High | No | 975 | Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -28.995 AMFE: -0.628 GC content %: 46.154 | |
| Ppatens_Pp3c6_23720V3.2 Pp3c6_23720V3.2 PAC:32976378 |
High | No | 982 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -29.043 AMFE: -0.637 GC content %: 45.621 | |
| Ppatens_Pp3c6_23720V3.3 Pp3c6_23720V3.3 PAC:32976379 |
High | No | 1073 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -28.956 AMFE: -0.642 GC content %: 45.107 | |
| Ppatens_Pp3c6_23720V3.4 Pp3c6_23720V3.4 PAC:32976380 |
High | No | 1161 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -29.182 AMFE: -0.644 GC content %: 45.306 | |
| Ppatens_Pp3c6_23720V3.5 Pp3c6_23720V3.5 PAC:32976381 |
High | No | 1177 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -29.227 AMFE: -0.652 GC content %: 44.860 | |
| Ppatens_Pp3c6_23720V3.6 Pp3c6_23720V3.6 PAC:32976382 |
High | No | 1252 | Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -29.393 AMFE: -0.655 GC content %: 44.888 | |
| Ppatens_Pp3c6_23720V3.7 Pp3c6_23720V3.7 PAC:32976383 |
High | No | 1260 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -30.452 AMFE: -0.654 GC content %: 46.587 | |
| Ppatens_Pp3c6_23720V3.8 Pp3c6_23720V3.8 PAC:32976384 |
High | No | 1350 | Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -30.548 AMFE: -0.663 GC content %: 46.074 | |
| Ppatens_Pp3c6_23720V3.9 Pp3c6_23720V3.9 PAC:32976385 |
High | No | 1433 | Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -29.693 AMFE: -0.646 GC content %: 45.987 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
