Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c6_29670 Pp3c6_29670 |
Chr06 | 19354336 | 19355979 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c6_29670V3.1 Pp3c6_29670V3.1 PAC:32975876 |
Low | Yes | 810 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -32.753 AMFE: -0.693 GC content %: 47.284 | |
Ppatens_Pp3c6_29670V3.2 Pp3c6_29670V3.2 PAC:32975877 |
Low | No | 1159 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -29.594 AMFE: -0.666 GC content %: 44.435 | |
Ppatens_Pp3c6_29670V3.3 Pp3c6_29670V3.3 PAC:32975878 |
Low | No | 1239 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -30.065 AMFE: -0.669 GC content %: 44.956 | |
Ppatens_Pp3c6_29670V3.4 Pp3c6_29670V3.4 PAC:32975879 |
Low | No | 1243 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -29.879 AMFE: -0.664 GC content %: 44.972 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c6_29670V3.1 | SwissProt | 2015-06-01 | P54209 | 4.0e-6 |
Ppatens_Pp3c6_29670V3.2 | SwissProt | 2015-06-01 | P54209 | 1.0e-5 |
Ppatens_Pp3c6_29670V3.3 | SwissProt | 2015-06-01 | P54209 | 1.0e-5 |
Ppatens_Pp3c6_29670V3.4 | SwissProt | 2015-06-01 | P54209 | 7.0e-6 |