GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c7_12760 Pp3c7_12760	Chr07	8649524	8651414	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c7_12760V3.1 Pp3c7_12760V3.1 PAC:32923404	High	No	1891		Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -33.252 AMFE: -0.686 GC content %: 48.440
Ppatens_Pp3c7_12760V3.2 Pp3c7_12760V3.2 PAC:32923405	High	No	357		Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -24.510 AMFE: -0.481 GC content %: 50.980

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).