GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c7_18040 Pp3c7_18040	Chr07	12298783	12299458	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c7_18040V3.1 Pp3c7_18040V3.1 PAC:32923018	High	No	219		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.119 AMFE: -0.609 GC content %: 42.922
Ppatens_Pp3c7_18040V3.2 Pp3c7_18040V3.2 PAC:32923019	High	No	676		Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -30.547 AMFE: -0.670 GC content %: 45.562

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).