Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c7_20060 Pp3c7_20060 |
Chr07 | 14097420 | 14098562 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c7_20060V3.1 Pp3c7_20060V3.1 PAC:32925732 |
High | No | 1143 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -26.885 AMFE: -0.669 GC content %: 40.157 | |
Ppatens_Pp3c7_20060V3.2 Pp3c7_20060V3.2 PAC:32925733 |
High | No | 303 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -26.436 AMFE: -0.556 GC content %: 47.525 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c7_20060V3.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-5N_PPa-LTR |