GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c7_20430 Pp3c7_20430	Chr07	14363951	14364986	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c7_20430V3.1 Pp3c7_20430V3.1 PAC:32923699	High	No	336		Get ORF Coding potential... Type: noncoding Potential: -1.497 Folding energies... MFEI: -32.679 AMFE: -0.642 GC content %: 50.893
Ppatens_Pp3c7_20430V3.2 Pp3c7_20430V3.2 PAC:32923700	High	No	913		Get ORF Coding potential... Type: noncoding Potential: -1.385 Folding energies... MFEI: -30.296 AMFE: -0.683 GC content %: 44.359

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).