Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c7_24009 Pp3c7_24009 |
Chr07 | 16218318 | 16220432 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c7_24009V3.1 Pp3c7_24009V3.1 PAC:32923485 |
High | No | 785 | Get ORF Coding potential... Type: noncoding Potential: -1.400 Folding energies... MFEI: -28.382 AMFE: -0.629 GC content %: 45.096 | |
Ppatens_Pp3c7_24009V3.2 Pp3c7_24009V3.2 PAC:32923486 |
High | No | 815 | Get ORF Coding potential... Type: noncoding Potential: -1.402 Folding energies... MFEI: -28.724 AMFE: -0.634 GC content %: 45.276 | |
Ppatens_Pp3c7_24009V3.3 Pp3c7_24009V3.3 PAC:32923487 |
High | No | 869 | Get ORF Coding potential... Type: noncoding Potential: -1.405 Folding energies... MFEI: -28.239 AMFE: -0.636 GC content %: 44.419 | |
Ppatens_Pp3c7_24009V3.4 Pp3c7_24009V3.4 PAC:32923488 |
High | No | 1450 | Get ORF Coding potential... Type: noncoding Potential: -1.402 Folding energies... MFEI: -28.034 AMFE: -0.676 GC content %: 41.448 | |
Ppatens_Pp3c7_24009V3.5 Pp3c7_24009V3.5 PAC:32923489 |
High | No | 1708 | Get ORF Coding potential... Type: noncoding Potential: -1.405 Folding energies... MFEI: -27.447 AMFE: -0.672 GC content %: 40.867 |