GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c7_26050 Pp3c7_26050	Chr07	17390531	17390794	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c7_26050V3.1 Pp3c7_26050V3.1 PAC:32923027	High	No	264		Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -15.568 AMFE: -0.541 GC content %: 28.788
Ppatens_Pp3c7_26050V3.2 Pp3c7_26050V3.2 PAC:32923028	High	No	246		Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -14.634 AMFE: -0.507 GC content %: 28.862

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).