GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c7_3580 Pp3c7_3580	Chr07	2194175	2195546	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c7_3580V3.1 Pp3c7_3580V3.1 PAC:32926175	High	No	1372		Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -29.497 AMFE: -0.669 GC content %: 44.096
Ppatens_Pp3c7_3580V3.2 Pp3c7_3580V3.2 PAC:32926176	High	No	210		Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -27.143 AMFE: -0.588 GC content %: 46.190

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).