GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c7_900 Pp3c7_900	Chr07	490318	492648	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c7_900V3.1 Pp3c7_900V3.1 PAC:32923061	High	No	593		Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -27.133 AMFE: -0.624 GC content %: 43.508
Ppatens_Pp3c7_900V3.2 Pp3c7_900V3.2 PAC:32923060	High	No	2259		Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -27.052 AMFE: -0.674 GC content %: 40.151

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).