Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c8_12710 Pp3c8_12710 |
Chr08 | 8229044 | 8231258 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c8_12710V3.1 Pp3c8_12710V3.1 PAC:32965791 |
High | No | 1131 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -29.027 AMFE: -0.669 GC content %: 43.413 | |
Ppatens_Pp3c8_12710V3.2 Pp3c8_12710V3.2 PAC:32965792 |
High | No | 639 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -28.122 AMFE: -0.651 GC content %: 43.192 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c8_12710V3.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA-TA-2N_PPa |