GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_14139 Pp3c8_14139	Chr08	9211427	9213417	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_14139V3.1 Pp3c8_14139V3.1 PAC:32966151	High	No	1122		Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -28.467 AMFE: -0.611 GC content %: 46.613
Ppatens_Pp3c8_14139V3.2 Pp3c8_14139V3.2 PAC:32966152	High	No	1626		Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -27.337 AMFE: -0.632 GC content %: 43.235

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).