Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c8_15580 Pp3c8_15580 |
Chr08 | 10278598 | 10281090 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c8_15580V3.1 Pp3c8_15580V3.1 PAC:32965538 |
High | No | 1592 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -27.261 AMFE: -0.711 GC content %: 38.317 | |
Ppatens_Pp3c8_15580V3.2 Pp3c8_15580V3.2 PAC:32965539 |
High | No | 1104 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -27.998 AMFE: -0.668 GC content %: 41.938 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c8_15580V3.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-124_GM-I | |
Ppatens_Pp3c8_15580V3.2 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-124_GM-I |