GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_16490 Pp3c8_16490	Chr08	10756976	10759519	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_16490V3.1 Pp3c8_16490V3.1 PAC:32965918	High	No	1181		Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -28.925 AMFE: -0.697 GC content %: 41.490
Ppatens_Pp3c8_16490V3.2 Pp3c8_16490V3.2 PAC:32965919	High	No	1196		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -28.537 AMFE: -0.689 GC content %: 41.388
Ppatens_Pp3c8_16490V3.3 Pp3c8_16490V3.3 PAC:32965920	High	No	207		Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -20.725 AMFE: -0.461 GC content %: 44.928

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).