GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_23820 Pp3c8_23820	Chr08	16693842	16694802	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_23820V3.1 Pp3c8_23820V3.1 PAC:32965981	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -40.572 AMFE: -0.685 GC content %: 59.238
Ppatens_Pp3c8_23820V3.2 Pp3c8_23820V3.2 PAC:32965982	Low	Yes	904		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -34.668 AMFE: -0.692 GC content %: 50.111

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).