Gene

Ppatens Pp3c8 3666

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppatens_Pp3c8_3666
Pp3c8_3666
Chr08 1927029 1927542 Phytozome v3.3 Physcomitrella_patens
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppatens_Pp3c8_3666V3.1
Pp3c8_3666V3.1
PAC:32963544
High No 514
Coding potential...
Type: noncoding Potential: -1.089
Folding energies...
MFEI: -24.961 AMFE: -0.578
GC content
%: 43.191


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pp3c8_3666.png