GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_3880 Pp3c8_3880	Chr08	2021811	2023292	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_3880V3.1 Pp3c8_3880V3.1 PAC:32966175	High	No	300		Get ORF Coding potential... Type: noncoding Potential: -1.433 Folding energies... MFEI: -32.100 AMFE: -0.606 GC content %: 53.000
Ppatens_Pp3c8_3880V3.2 Pp3c8_3880V3.2 PAC:32966176	High	No	1482		Get ORF Coding potential... Type: noncoding Potential: -1.322 Folding energies... MFEI: -28.536 AMFE: -0.644 GC content %: 44.332

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).