GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_700 Pp3c8_700	Chr08	316690	317853	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_700V3.1 Pp3c8_700V3.1 PAC:32963608	High	No	1164		Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -31.744 AMFE: -0.669 GC content %: 47.423
Ppatens_Pp3c8_700V3.2 Pp3c8_700V3.2 PAC:32963609	Low	Yes	210		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -44.286 AMFE: -0.694 GC content %: 63.810

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).