GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_7950 Pp3c8_7950	Chr08	4836082	4837731	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_7950V3.1 Pp3c8_7950V3.1 PAC:32963925	High	No	1447		Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -31.603 AMFE: -0.642 GC content %: 49.205
Ppatens_Pp3c8_7950V3.2 Pp3c8_7950V3.2 PAC:32963926	High	No	1448		Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -31.934 AMFE: -0.630 GC content %: 50.691

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).