GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c8_8060 Pp3c8_8060	Chr08	4951772	4953969	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c8_8060V3.1 Pp3c8_8060V3.1 PAC:32966386	High	No	688		Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -28.547 AMFE: -0.661 GC content %: 43.169
Ppatens_Pp3c8_8060V3.2 Pp3c8_8060V3.2 PAC:32966387	High	No	992		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -27.308 AMFE: -0.717 GC content %: 38.105

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).