GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c9_16170 Pp3c9_16170	Chr09	11059376	11060407	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c9_16170V3.1 Pp3c9_16170V3.1 PAC:32911097	High	No	1032		Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -31.609 AMFE: -0.647 GC content %: 48.837
Ppatens_Pp3c9_16170V3.2 Pp3c9_16170V3.2 PAC:32911098	High	No	960		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -32.000 AMFE: -0.643 GC content %: 49.792

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).