GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c9_16860 Pp3c9_16860	Chr09	11408405	11409102	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c9_16860V3.1 Pp3c9_16860V3.1 PAC:32911350	High	No	376		Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -31.330 AMFE: -0.647 GC content %: 48.404
Ppatens_Pp3c9_16860V3.2 Pp3c9_16860V3.2 PAC:32911351	High	No	698		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -29.155 AMFE: -0.665 GC content %: 43.840

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).