GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c9_23670 Pp3c9_23670	Chr09	16197140	16199642	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c9_23670V3.1 Pp3c9_23670V3.1 PAC:32913225	High	No	1375		Get ORF Coding potential... Type: noncoding Potential: -1.333 Folding energies... MFEI: -28.313 AMFE: -0.651 GC content %: 43.491
Ppatens_Pp3c9_23670V3.2 Pp3c9_23670V3.2 PAC:32913223	High	No	1935		Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -29.669 AMFE: -0.665 GC content %: 44.599
Ppatens_Pp3c9_23670V3.3 Pp3c9_23670V3.3 PAC:32913224	High	No	2006		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -29.307 AMFE: -0.658 GC content %: 44.566

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).