GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c9_4810 Pp3c9_4810	Chr09	2770358	2773532	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c9_4810V3.1 Pp3c9_4810V3.1 PAC:32914188	High	No	201		Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -25.473 AMFE: -0.575 GC content %: 44.279
Ppatens_Pp3c9_4810V3.2 Pp3c9_4810V3.2 PAC:32914189	High	No	2760		Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -27.848 AMFE: -0.639 GC content %: 43.551

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).