GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3s355_10 Pp3s355_10	scaffold_355	233	742	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3s355_10V3.1 Pp3s355_10V3.1 PAC:32980892	High	No	383		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -30.496 AMFE: -0.612 GC content %: 49.869
Ppatens_Pp3s355_10V3.2 Pp3s355_10V3.2 PAC:32980891	High	No	455		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -30.857 AMFE: -0.665 GC content %: 46.374

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).