Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3s877_30 Pp3s877_30 |
scaffold_877 | 2139 | 3928 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3s877_30V3.2 Pp3s877_30V3.2 PAC:32948202 |
High | No | 567 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -28.765 AMFE: -0.568 GC content %: 50.617 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3s877_30V3.2 | RepBase (RepeatMasker) | 2014-01-31 | LSU-rRNA_Ath |