GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.1G012900 Prupe.1G012900	Pp01	981494	982472	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.1G012900.1 Prupe.1G012900.1 PAC:32117406	High	No	677		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -24.609 AMFE: -0.641 GC content %: 38.405
Ppersica_Prupe.1G012900.2 Prupe.1G012900.2 PAC:32117407	High	No	651		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -25.038 AMFE: -0.663 GC content %: 37.788

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).