Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppersica_Prupe.1G015200 Prupe.1G015200 |
Pp01 | 1097198 | 1099456 | Phytozome | v2.1 | Prunus_persica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppersica_Prupe.1G015200.1 Prupe.1G015200.1 PAC:32117103 |
Low | No | 1826 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -26.008 AMFE: -0.614 GC content %: 42.388 | |
Ppersica_Prupe.1G015200.2 Prupe.1G015200.2 PAC:32117104 |
Low | No | 1848 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -25.779 AMFE: -0.612 GC content %: 42.154 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppersica_Prupe.1G015200.1 | RepBase (RepeatMasker) | 2014-01-31 | Copia-61_Mad-LTR | |
Ppersica_Prupe.1G015200.2 | RepBase (RepeatMasker) | 2014-01-31 | Copia-61_Mad-LTR | |
Ppersica_Prupe.1G015200.1 | SwissProt | 2015-06-01 | Q8C8T8 | 2.0e-7 |
Ppersica_Prupe.1G015200.2 | SwissProt | 2015-06-01 | Q06672 | 2.0e-6 |