Gene

Ppersica Prupe.1G044100

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppersica_Prupe.1G044100
Prupe.1G044100
Pp01 3152163 3153857 Phytozome v2.1 Prunus_persica
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppersica_Prupe.1G044100.1
Prupe.1G044100.1
PAC:32111298
High No 1170
Coding potential...
Type: noncoding Potential: -0.659
Folding energies...
MFEI: -23.974 AMFE: -0.669
GC content
%: 35.812
Ppersica_Prupe.1G044100.2
Prupe.1G044100.2
PAC:32111299
High No 1140
Coding potential...
Type: noncoding Potential: -0.654
Folding energies...
MFEI: -23.193 AMFE: -0.651
GC content
%: 35.614


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Prupe.1G044100.png