GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.1G153300 Prupe.1G153300	Pp01	12089214	12091842	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.1G153300.1 Prupe.1G153300.1 PAC:32110432	High	No	2485		Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -26.386 AMFE: -0.706 GC content %: 37.384
Ppersica_Prupe.1G153300.2 Prupe.1G153300.2 PAC:32110433	High	No	563		Get ORF Coding potential... Type: noncoding Potential: -0.521 Folding energies... MFEI: -26.430 AMFE: -0.620 GC content %: 42.629

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).