GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.1G183100 Prupe.1G183100	Pp01	16189658	16191006	Phytozome	v2.1	Prunus_persica	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.1G183100.2 Prupe.1G183100.2 PAC:32113032	High	No	1169		Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -21.700 AMFE: -0.569 GC content %: 38.152
Ppersica_Prupe.1G183100.3 Prupe.1G183100.3 PAC:32113033	High	No	1160		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -21.552 AMFE: -0.567 GC content %: 38.017

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).