GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.1G491900 Prupe.1G491900	Pp01	40905905	40906586	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.1G491900.1 Prupe.1G491900.1 PAC:32112254	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -24.765 AMFE: -0.660 GC content %: 37.537

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).