GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.1G527800 Prupe.1G527800	Pp01	43201175	43205728	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.1G527800.1 Prupe.1G527800.1 PAC:32117424	High	No	209		Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -26.411 AMFE: -0.541 GC content %: 48.804
Ppersica_Prupe.1G527800.2 Prupe.1G527800.2 PAC:32117425	High	No	325		Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -23.754 AMFE: -0.551 GC content %: 43.077

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).