GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.1G559200 Prupe.1G559200	Pp01	45651976	45659190	Phytozome	v2.1	Prunus_persica	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.1G559200.2 Prupe.1G559200.2 PAC:32111883	High	No	1480		Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -25.007 AMFE: -0.609 GC content %: 41.081
Ppersica_Prupe.1G559200.4 Prupe.1G559200.4 PAC:32111884	High	No	1029		Get ORF Coding potential... Type: noncoding Potential: -0.657 Folding energies... MFEI: -25.044 AMFE: -0.599 GC content %: 41.788
Ppersica_Prupe.1G559200.5 Prupe.1G559200.5 PAC:32111885	High	No	375		Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -29.013 AMFE: -0.684 GC content %: 42.400

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).