Gene
Ppersica Prupe.2G157600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppersica_Prupe.2G157600 Prupe.2G157600 |
Pp02 | 21095617 | 21097789 | Phytozome | v2.1 | Prunus_persica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppersica_Prupe.2G157600.1 Prupe.2G157600.1 PAC:32078413 |
Low | No | 1617 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -23.927 AMFE: -0.651 GC content %: 36.735 | |
| Ppersica_Prupe.2G157600.2 Prupe.2G157600.2 PAC:32078416 |
Low | No | 1533 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -23.079 AMFE: -0.633 GC content %: 36.464 | |
| Ppersica_Prupe.2G157600.3 Prupe.2G157600.3 PAC:32078414 |
High | No | 784 | Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -22.347 AMFE: -0.584 GC content %: 38.265 | |
| Ppersica_Prupe.2G157600.4 Prupe.2G157600.4 PAC:32078415 |
High | No | 859 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -23.877 AMFE: -0.622 GC content %: 38.417 | |
| Ppersica_Prupe.2G157600.5 Prupe.2G157600.5 PAC:32078417 |
High | No | 721 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -23.870 AMFE: -0.617 GC content %: 38.696 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Ppersica_Prupe.2G157600.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-5_HV | |
| Ppersica_Prupe.2G157600.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-5_HV |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
