Gene
Ppersica Prupe.2G234500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppersica_Prupe.2G234500 Prupe.2G234500 |
Pp02 | 25695981 | 25697816 | Phytozome | v2.1 | Prunus_persica | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppersica_Prupe.2G234500.10 Prupe.2G234500.10 PAC:32074636 |
High | No | 811 | Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -26.498 AMFE: -0.651 GC content %: 40.691 | |
| Ppersica_Prupe.2G234500.11 Prupe.2G234500.11 PAC:32074635 |
High | No | 777 | Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -27.632 AMFE: -0.673 GC content %: 41.055 | |
| Ppersica_Prupe.2G234500.12 Prupe.2G234500.12 PAC:32074632 |
High | No | 1266 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -25.434 AMFE: -0.660 GC content %: 38.547 | |
| Ppersica_Prupe.2G234500.13 Prupe.2G234500.13 PAC:32074634 |
High | No | 1284 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -25.522 AMFE: -0.662 GC content %: 38.551 | |
| Ppersica_Prupe.2G234500.2 Prupe.2G234500.2 PAC:32074631 |
High | No | 1448 | Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -25.580 AMFE: -0.667 GC content %: 38.329 | |
| Ppersica_Prupe.2G234500.3 Prupe.2G234500.3 PAC:32074633 |
High | No | 1433 | Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -25.394 AMFE: -0.666 GC content %: 38.102 | |
| Ppersica_Prupe.2G234500.4 Prupe.2G234500.4 PAC:32074637 |
High | No | 836 | Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -27.141 AMFE: -0.665 GC content %: 40.789 | |
| Ppersica_Prupe.2G234500.5 Prupe.2G234500.5 PAC:32074630 |
High | No | 1410 | Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -25.383 AMFE: -0.662 GC content %: 38.369 | |
| Ppersica_Prupe.2G234500.8 Prupe.2G234500.8 PAC:32074629 |
High | No | 1390 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -25.094 AMFE: -0.659 GC content %: 38.058 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
