GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.3G117200 Prupe.3G117200	Pp03	10009611	10010760	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.3G117200.1 Prupe.3G117200.1 PAC:32109089	High	No	1077		Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -25.014 AMFE: -0.625 GC content %: 40.019
Ppersica_Prupe.3G117200.2 Prupe.3G117200.2 PAC:32109090	High	No	1061		Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -24.647 AMFE: -0.615 GC content %: 40.057

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).