GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppersica_Prupe.3G158600 Prupe.3G158600	Pp03	17715986	17720423	Phytozome	v2.1	Prunus_persica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppersica_Prupe.3G158600.1 Prupe.3G158600.1 PAC:32108159	High	No	2357		Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -24.941 AMFE: -0.697 GC content %: 35.808
Ppersica_Prupe.3G158600.2 Prupe.3G158600.2 PAC:32108160	High	No	2223		Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -25.226 AMFE: -0.695 GC content %: 36.302

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).